Local alignment of two-base encoded DNA sequence

نویسندگان
چکیده

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Evolutionary Two-Dimensional DNA Sequence Alignment

This article presents a model for DNA sequence alignment. In our model, a finite state automaton writes two-dimensional maps of nucleotide sequences. An evolutionary method for sequence alignment from this representation is proposed. We use HIV as the working example. Experimental results indicate that structural similarities produced by two-dimensional representation of sequences allow us to p...

متن کامل

6.8 Local Sequence Alignment

log g i,j f(j) . For large n, the resulting PAM matrices often allow one to find related proteins even when there are practically no matches in the alignment. In this case, the underlying nucleotide sequences are so diverged that their comparison usually fails to find any statistically significant similarities. For example, the similarity between the cancer-causing ν-sis oncogene and the growth...

متن کامل

Fast Semi-local Alignment for DNA Sequence Database Search

Given a query DNA sequence, our goal is to find in the DNA sequence database all the sequence segments that are similar to the query. In this paper we present a stringto-signal transform technique that can transform a DNA sequence into a four-channel signal. Without considering gaps, the edit distance between two DNA sequences can be calculated as the sum of absolute difference (SAD) between th...

متن کامل

A local algorithm for DNA sequence alignment with inversions.

A dynamic programming algorithm to find all optimal alignments of DNA subsequences is described. The alignments use not only substitutions, insertions and deletions of nucleotides but also inversions (reversed complements) of substrings of the sequences. The inversion alignments themselves contain substitutions, insertions and deletions of nucleotides. We study the problem of alignment with non...

متن کامل

DNA Display I. Sequence-Encoded Routing of DNA Populations

Recently reported technologies for DNA-directed organic synthesis and for DNA computing rely on routing DNA populations through complex networks. The reduction of these ideas to practice has been limited by a lack of practical experimental tools. Here we describe a modular design for DNA routing genes, and routing machinery made from oligonucleotides and commercially available chromatography re...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: BMC Bioinformatics

سال: 2009

ISSN: 1471-2105

DOI: 10.1186/1471-2105-10-175